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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs137881301 chr16:4875943 G/A 3.31E-6 407 15.57 13.2 7.8 KM Plot
LGG rs137883610 chr5:156037674 T/C 2.91E-5 405 16.6 14.4 11.17 KM Plot
LGG rs137889674 chr11:2990183 AATCAGAAATGGTGG/A 0.000168 398 15.6 13.7 11.8 KM Plot
LGG rs138018754 chr17:75209703 G/GA 0.000181 407 15.17 17.62 15.53 KM Plot
LGG rs138228557 chr1:236516147 CATAA/C 0.000127 406 15.37 16.28 4 KM Plot
LGG rs138402364 chr5:156018055 A/AAC 0.000158 401 16.6 13.78 13.5 KM Plot
LGG rs138486995 chr7:64931983 C/T 7.59E-8 399 15.57 15.07 2.27 KM Plot
LGG rs138568838 chr3:153681624 T/C 0 404 15.15 17.07 0.23 KM Plot
LGG rs138604016 chr4:84479120 C/G 0 385 15.18 17.9 5.17 KM Plot
LGG rs138782604 chr6:36052710 C/CT 9.43E-10 406 15.67 15.15 6.15 KM Plot
LGG rs138841742 chr7:73221168 C/CA 3.9E-5 399 15.67 14.48 8.07 KM Plot
LGG rs138867102 chr12:69669490 TAAAAG/T 0.000129 406 15.17 14.63 18.27 KM Plot
LGG rs139108576 chr7:5069442 ATTC/A 0.000135 405 15.3 16.27 12.03 KM Plot
LGG rs139270315 chr8:1733159 TG/T 1.58E-6 395 15.33 15.6 5.42 KM Plot
LGG rs139288409 chr5:156005439 C/A 8.66E-5 404 15.38 15.33 11.63 KM Plot